Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs13194067 chr6:42655088 G/A 4.0E-8 131 37.62 47.52 20.6 KM Plot
TGCT rs13200782 chr6:42614780 G/A 1.72E-9 131 37.62 50.8 20.6 KM Plot
TGCT rs13213476 chr6:42608668 T/C 2.89E-8 132 37.7 52.38 20.6 KM Plot
TGCT rs13222044 chr7:128716525 C/T 1.67E-5 134 42.27 31.17 17.1 KM Plot
TGCT rs13227075 chr7:128643297 T/C 1.69E-5 134 42.27 30.3 17.1 KM Plot
TGCT rs13232316 chr7:128715299 A/T 1.67E-5 134 42.27 31.17 17.1 KM Plot
TGCT rs13236009 chr7:128663173 T/G 1.69E-5 134 42.27 30.3 17.1 KM Plot
TGCT rs13237546 chr7:128720433 G/A 1.67E-5 134 42.27 31.17 17.1 KM Plot
TGCT rs13238352 chr7:128647942 C/T 1.69E-5 134 42.27 30.3 17.1 KM Plot
TGCT rs13239597 chr7:128695983 C/A 1.69E-5 134 42.27 30.3 17.1 KM Plot
TGCT rs13240595 chr7:128731777 C/A 2.04E-5 132 42.27 32.95 17.1 KM Plot
TGCT rs13246321 chr7:128701331 T/C 1.87E-5 133 42.18 30.3 17.1 KM Plot
TGCT rs13258027 chr8:125596248 T/C 1.92E-5 132 41.97 46.77 22.68 KM Plot
TGCT rs1328082 chr13:106452175 T/C 1.43E-5 133 41.97 62.67 109.55 KM Plot
TGCT rs13343471 chr19:37932130 A/G 2.24E-13 132 45.83 36.12 17.1 KM Plot